Since the community decided to move the project into the Linux Foundation with the constraint of a name change to the project, it has been a goal of the project to minimize the impact to the user base. If you experience issues making the move, please reach out to the community so we can help you!
SIF Image Compatibility
The Apptainer project has decided to make no changes related to the project
renaming at the image format level. This means that default metadata within
SIF images and their filesystems will retain the
singularity name without
change. This will ensure that containers built with Apptainer will continue
to work with installations of Singularity.
This decision was made to ensure that users can continue to package their applications and data with Apptainer without concerns of image format incompatibility when running in a different computing environment or collaborating with colleagues that still use a Singularity installation.
Singularity Prefixed Environment Variable Support
Apptainer respects environment variables with the
SINGULARITYENV_ prefixes when their respective
APPTAINERENV_ counterparts are not set.
This first command does not use any environment variable compatibility behavior
as it is using the
APPTAINERENV_ prefix to command Apptainer to create an
environment variable in the container with the name
FOO and the value
$ APPTAINERENV_FOO=BAR apptainer exec docker://alpine env [...] FOO=BAR
We can see from the
env output that this environment variable was properly
set inside the container.
Next we can use the
SINGULARITYENV_ prefix to do the same thing, but this
time we wil have the intended value be
$ SINGULARITYENV_FOO=BAZ apptainer exec docker://alpine env WARNING: DEPRECATED USAGE: Forwarding SINGULARITYENV_FOO as environment variable will not be supported in the future, use APPTAINERENV_FOO instead [...] FOO=BAZ
Notice that we have a warning for
DEPRECATED USAGE when doing so. This is
because a future version of Apptainer may stop supporting environment variable
compatibility once it is past this current period of transition.
Finally, if both are set, the value set by the
APPTAINERENV_ variable will
take priority over the
$ APPTAINERENV_FOO=BAR SINGULARITYENV_FOO=BAZ apptainer exec iqube_latest.sif env WARNING: Skipping environment variable [SINGULARITYENV_FOO=BAZ], FOO is already overridden with different value [BAR] [...] FOO=BAR
In this case a warning is emitted to let the user know that two variables were set to create the same environment variable in the container in case they were unaware of one of them existing in their environment.
Automatic User Configuration Migration
Apptainer stores user configuration in files and directories under
~/.apptainer. Invocation of the
apptainer command will automatically
trigger Apptainer to create this directory, if it doesn’t exist. In order to
ease the transition of users from Singularity to Apptainer, Apptainer will look
~/.singularity directory when the
~/.apptainer directory is being
created and will migrate user configuration files and keyrings automatically.
The following data will be migrated if it is found:
Remote endpoint configurations
OCI registry configurations stored in the Docker config format
Singularity Public PGP keyring
Singularity Private PGP keyring
Below we can see example output from when user configuration is being migrated:
$ apptainer exec docker://alpine echo INFO: Detected Singularity user configuration directory INFO: Detected Singularity remote configuration, migrating... INFO: Detected Singularity docker configuration, migrating... INFO: Detected public Singularity pgp keyring, migrating... INFO: Detected private Singularity pgp keyring, migrating... INFO: Converting OCI blobs to SIF format INFO: Starting build... [...]
We can also see that subsequent use of Apptainer will not perform this migration again:
$ apptainer exec docker://alpine echo WARNING: /usr/local/etc/singularity/ exists, migration to apptainer by system administrator is not complete INFO: Using cached SIF image [...]
Apptainer will not migrate cached container data such as OCI blobs and SIF images. User caches will need to be manually migrated or reconstructed through normal use of Apptainer.
The default remote configuration has changed in Apptainer, so if you did
not previously set any remotes and want to continue to use the previous
library:// and/or pgp keys, see
Restoring pre-Apptainer library behavior.